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1

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

Kılıç, Sefa, Sagitova, Dinara M., Wolfish, Shoshannah, Bely, Benoit, Courtot, Mélanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan

Journal:

Year:

2016

Language:

english

File:

PDF, 963 KB

english, 2016

2

The frequency of eating disorder tendenciesamong male high school wrestlers, non-wrestler athletes, and non-athletes

D.D. Brugh, J.H. Williford Jr., T.R. Chibucos, P.A. Shewokis

Journal:

Journal of the American Dietetic Association

Year:

2001

Language:

english

File:

PDF, 81 KB

english, 2001

3

Leadership Development in Higher Education

Chibucos, Thomas R., Green, Madeleine F.

Journal:

The Journal of Higher Education

Year:

1989

Language:

english

File:

PDF, 1.99 MB

english, 1989

4

Editorial introduction

Thomas R. Chibucos

Journal:

Infant Mental Health Journal

Year:

1980

Language:

english

File:

PDF, 98 KB

english, 1980

5

A perspective on the mistreatment of children

Dr. Thomas R. Chibucos

Journal:

Infant Mental Health Journal

Year:

1980

Language:

english

File:

PDF, 750 KB

english, 1980

6

Infants, Robert B. McCall, Harvard University Press, Cambridge, 1979 (185 pages, $10.00)

Thomas R. Chibucos

Journal:

Infant Mental Health Journal

Year:

1983

Language:

english

File:

PDF, 172 KB

english, 1983

7

Visual and tactual variation seeking in the rat: Intermodal effects of early rearing

Thomas H. Gorry, Thomas R. Chibucos, Robert W. Bell

Journal:

Developmental Psychobiology

Year:

1971

Language:

english

File:

PDF, 601 KB

english, 1971

8

Are College Students Taking an Introductory Nutrition Course Following the Dietary Guidelines for Americans?

J.H. Williford Jr., P.A. Wakefield, T.R. Chibucos, D.L. Hentges

Journal:

Journal of the American Dietetic Association

Year:

1998

File:

PDF, 180 KB

1998

9

Programmed cell death in host-symbiont associations, viewed through the Gene Ontology

Marcus C Chibucos, Candace W Collmer, Trudy Torto-Alalibo, Michelle Gwinn-Giglio, Magdalen Lindeberg, Donghui Li, Brett M Tyler

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 2.45 MB

english, 2009

10

Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology

Marcus C Chibucos, Brett M Tyler

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 1.63 MB

english, 2009

11

Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms

Shaowu Meng, Trudy Torto-Alalibo, Marcus C Chibucos, Brett M Tyler, Ralph A Dean

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 8.31 MB

english, 2009

12

Describing commonalities in microbial effector delivery using the Gene Ontology

Marcus C. Chibucos, Tsai-Tien Tseng, João C. Setubal

Journal:

Trends in Microbiology

Year:

2009

Language:

english

File:

PDF, 360 KB

english, 2009

13

Kinetic and phylogenetic analysis of plant polyamine uptake transporters

Vaishali Mulangi, Marcus C. Chibucos, Vipaporn Phuntumart, Paul F. Morris

Journal:

Year:

2012

Language:

english

File:

PDF, 557 KB

english, 2012

14

[Outreach Scholarship] Serving Children and Families Through Community-University Partnerships: Success Stories Volume 1 || The Healthy Neighborhood Project

Chibucos, Thomas R., Lerner, Richard M.

Year:

1999

Language:

english

File:

PDF, 681 KB

english, 1999

15

Initial Findings in a Longitudinal Study of the Effectiveness of the Sex Can Wait Sexual Abstinence Curriculum for Grades 5–8

Laflin, Molly T., Sommers, Joanne M., Chibucos, Thomas R.

Journal:

American Journal of Sexuality Education

Year:

2005

Language:

english

File:

PDF, 145 KB

english, 2005

16

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

Arnaud, M. B., Cerqueira, G. C., Inglis, D. O., Skrzypek, M. S., Binkley, J., Chibucos, M. C., Crabtree, J., Howarth, C., Orvis, J., Shah, P., Wymore, F., Binkley, G., Miyasato, S. R., Simison, M., Sh

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 9.18 MB

english, 2012

17

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

Arnaud, M. B., Chibucos, M. C., Costanzo, M. C., Crabtree, J., Inglis, D. O., Lotia, A., Orvis, J., Shah, P., Skrzypek, M. S., Binkley, G., Miyasato, S. R., Wortman, J. R., Sherlock, G.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.05 MB

english, 2010

18

Analysis of day care inservice education: using the Katz model

Chibucos, Pam Perry, Scriven, Georgia Hammons

Journal:

Early Child Development and Care

Year:

1982

Language:

english

File:

PDF, 1.01 MB

english, 1982

19

Leadership Development in Higher Education: An Evaluation of the ACE Fellows Program

Thomas R. Chibucos and Madeleine F. Green

Journal:

The Journal of Higher Education

Year:

1989

Language:

english

File:

PDF, 1.42 MB

english, 1989

20

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

Tallon, Luke J, Liu, Xinyue, Bennuru, Sasisekhar, Chibucos, Marcus C, Godinez, Alvaro, Ott, Sandra, Zhao, Xuechu, Sadzewicz, Lisa, Fraser, Claire M, Nutman, Thomas B, Dunning Hotopp, Julie C

Journal:

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

21

Levels of Polyamines and Kinetic Characterization of Their Uptake in the Soybean Pathogen Phytophthora sojae

Chibucos, M. C., Morris, P. F.

Journal:

Applied and Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 130 KB

english, 2006

22

An ontology for microbial phenotypes

Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G

Journal:

BMC Microbiology

Year:

2014

Language:

english

File:

PDF, 2.34 MB

english, 2014

23

Common Problems of Design and Analysis in Evaluative Research

Porter, A. C., Chibucos, T. R.

Journal:

Sociological Methods & Research

Year:

1975

Language:

english

File:

PDF, 1019 KB

english, 1975

24

Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection

Hazen, T. H., Sahl, J. W., Redman, J. C., Morris, C. R., Daugherty, S. C., Chibucos, M. C., Sengamalay, N. A., Fraser-Liggett, C. M., Steinsland, H., Whittam, T. S., Whittam, B., Manning, S. D., Rasko

Journal:

Journal of Bacteriology

Year:

2012

Language:

english

File:

PDF, 89 KB

english, 2012

25

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

Ioannidis, Panagiotis, Lu, Yong, Kumar, Nikhil, Creasy, Todd, Daugherty, Sean, Chibucos, Marcus C, Orvis, Joshua, Shetty, Amol, Ott, Sandra, Flowers, Melissa, Sengamalay, Naomi, Tallon, Luke J, Pick,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

26

Inhibition of Myocardin-Related Transcription Factor/Serum Response Factor Signaling Decreases Lung Fibrosis and Promotes Mesenchymal Cell Apoptosis

Sisson, Thomas H., Ajayi, Iyabode O., Subbotina, Natalya, Dodi, Amos E., Rodansky, Eva S., Chibucos, Lauren N., Kim, Kevin K., Keshamouni, Venkateshwar G., White, Eric S., Zhou, Yong, Higgins, Peter D

Journal:

The American Journal of Pathology

Year:

2015

Language:

english

File:

PDF, 3.64 MB

english, 2015

27

Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans

Chibucos, M. C., Crabtree, J., Nagaraj, S., Chaturvedi, S., Chaturvedi, V.

Journal:

Genome Announcements

Year:

2013

Language:

english

File:

PDF, 139 KB

english, 2013

28

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

Torto-Alalibo, T., Collmer, C. W., Gwinn-Giglio, M., Lindeberg, M., Meng, S., Chibucos, M. C., Tseng, T.-T., Lomax, J., Biehl, B., Ireland, A., Bird, D., Dean, R. A., Glasner, J. D., Perna, N., Setuba

Journal:

Microbiology and Molecular Biology Reviews

Year:

2010

Language:

english

File:

PDF, 3.80 MB

english, 2010

29

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

Baxter, L., Tripathy, S., Ishaque, N., Boot, N., Cabral, A., Kemen, E., Thines, M., Ah-Fong, A., Anderson, R., Badejoko, W., Bittner-Eddy, P., Boore, J. L., Chibucos, M. C., Coates, M., Dehal, P., Del

Journal:

Year:

2010

Language:

english

File:

PDF, 1.32 MB

english, 2010

30

Adolescent Substance Use and Perceived Family Functioning

SMART, L. S., CHIBUCOS, T. R., DIDIER, L. A.

Journal:

Journal of Family Issues

Year:

1990

Language:

english

File:

PDF, 1.66 MB

english, 1990

31

Standardized description of scientific evidence using the Evidence Ontology (ECO)

Chibucos, M. C., Mungall, C. J., Balakrishnan, R., Christie, K. R., Huntley, R. P., White, O., Blake, J. A., Lewis, S. E., Giglio, M.

Journal:

Year:

2014

Language:

english

File:

PDF, 957 KB

english, 2014

32

The genome sequence of four isolates from the family Lichtheimiaceae

Chibucos, M. C., Etienne, K. A., Orvis, J., Lee, H., Daugherty, S., Lockhart, S. R., Ibrahim, A. S., Bruno, V. M.

Journal:

Pathogens and Disease

Year:

2015

Language:

english

File:

PDF, 423 KB

english, 2015

33

Hierarchical decision making: resource distribution exhibits stronger effect on crayfish dominance relationships and shelter occupation than prior social experience and resource ownership

Chibucos, K., Moore, P.A., Wofford, S.J.

Journal:

Year:

2015

Language:

english

File:

PDF, 575 KB

english, 2015

34

Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842

Etienne, K. A., Chibucos, M. C., Su, Q., Orvis, J., Daugherty, S., Ott, S., Sengamalay, N. A., Fraser, C. M., Lockhart, S. R., Bruno, V. M.

Journal:

Genome Announcements

Year:

2014

Language:

english

File:

PDF, 130 KB

english, 2014

35

Longitudinal Examination of Father-Infant Interaction and Infant-Father Attachment

Thomas R. Chibucos and Patricia R. Kail

Journal:

Merrill-Palmer Quarterly of Behavior and Development

Year:

1981

Language:

english

File:

PDF, 1.09 MB

english, 1981

36

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

Bastian, F. B., Chibucos, M. C., Gaudet, P., Giglio, M., Holliday, G. L., Huang, H., Lewis, S. E., Niknejad, A., Orchard, S., Poux, S., Skunca, N., Robinson-Rechavi, M.

Journal:

Year:

2015

Language:

english

File:

PDF, 693 KB

english, 2015

37

Annotated draft genome sequences of three species of Cryptosporidium : Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1

Ifeonu, Olukemi O., Chibucos, Marcus C., Orvis, Joshua, Su, Qi, Elwin, Kristin, Guo, Fengguang, Zhang, Haili, Xiao, Lihua, Sun, Mingfei, Chalmers, Rachel M., Fraser, Claire M., Zhu, Guan, Kissinger, J

Journal:

Pathogens and Disease

Year:

2016

Language:

english

File:

PDF, 575 KB

english, 2016

38

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

Chibucos, Marcus C., Soliman, Sameh, Gebremariam, Teclegiorgis, Lee, Hongkyu, Daugherty, Sean, Orvis, Joshua, Shetty, Amol C., Crabtree, Jonathan, Hazen, Tracy H., Etienne, Kizee A., Kumari, Priti, O’

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

39

Expressed Sequence Tags from Phytophthora sojae Reveal Genes Specific to Development and Infection

Torto-Alalibo, Trudy A., Tripathy, Sucheta, Smith, Brian M., Arredondo, Felipe D., Zhou, Lecong, Li, Hua, Chibucos, Marcus C., Qutob, Dinah, Gijzen, Mark, Mao, Chunhong, Sobral, Bruno W. S., Waugh, Ma

Journal:

Molecular Plant-Microbe Interactions

Year:

2007

Language:

english

File:

PDF, 418 KB

english, 2007

40

Vaginal Candida spp. genomes from women with vulvovaginal candidiasis

Bradford, L. Latéy, Chibucos, Marcus, Ma, Bing, Bruno, Vincent, Ravel, Jacques

Journal:

Pathogens and Disease

Year:

2017

Language:

english

File:

PDF, 611 KB

english, 2017

41

Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

Humphrys, Michael S., Creasy, Todd, Sun, Yezhou, Shetty, Amol C., Chibucos, Marcus C., Drabek, Elliott F., Fraser, Claire M., Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patri

Journal:

Year:

2013

Language:

english

File:

PDF, 868 KB

english, 2013

42

Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

Shelburne, Samuel A., Ajami, Nadim J., Chibucos, Marcus C., Beird, Hannah C., Tarrand, Jeffrey, Galloway-Peña, Jessica, Albert, Nathan, Chemaly, Roy F., Ghantoji, Shashank S., Marsh, Lisa, Pemmaraju,

Journal:

Year:

2015

Language:

english

File:

PDF, 2.57 MB

english, 2015

43

The Ontology for Biomedical Investigations

Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer

Journal:

Year:

2016

Language:

english

File:

PDF, 2.59 MB

english, 2016

44

Phosphodiesterase 4 inhibition reduces lung fibrosis following targeted type II alveolar epithelial cell injury

Sisson, Thomas H., Christensen, Paul J., Muraki, Yo, Dils, Anthony J., Chibucos, Lauren, Subbotina, Natalya, Tohyama, Kimio, Horowitz, Jeffrey C., Matsuo, Takanori, Bailie, Marc, Nikam, Sham, Hazama,

Journal:

Physiological Reports

Year:

2018

Language:

english

File:

PDF, 647 KB

english, 2018

45

Phenotype annotation with the ontology of microbial phenotypes (OMP)

Siegele, Deborah A., LaBonte, Sandra A., Wu, Peter I-Fan, Chibucos, Marcus C., Nandendla, Suvarna, Giglio, Michelle G., Hu, James C.

Journal:

Journal of Biomedical Semantics

Year:

2019

Language:

english

File:

PDF, 1.32 MB

english, 2019

46

Phenotype annotation with the ontology of microbial phenotypes (OMP)

Siegele, Deborah A., LaBonte, Sandra A., Wu, Peter I-Fan, Chibucos, Marcus C., Nandendla, Suvarna, Giglio, Michelle G., Hu, James C.

Journal:

Journal of Biomedical Semantics

Year:

2019

File:

PDF, 1.32 MB

2019

47

Development of an Ontology of Microbial Phenotypes (OMP)

Giglio, Michelle, Mungall, Chris, Uetz, Peter, Yin, Lanlan, Goll, Johannes, Siegele, Deborah, Chibucos, Marcus, Hu, James

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 8.35 MB

english, 2009

48

Development of an Ontology of Microbial Phenotypes (OMP)

Giglio, Michelle, Mungall, Chris, Uetz, Peter, Yin, Lanlan, Goll, Johannes, Siegele, Deborah, Chibucos, Marcus, Hu, James

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 8.35 MB

2009

49

Signature of adaptive evolution in olfactory receptor genes in Coryâs Shearwater supports molecular basis for smell in procellariiform seabirds

C. Silva, MÃ³nica, Chibucos, Marcus, Munro, James B., Daugherty, Sean, Coelho, M. Manuela, C. Silva, Joana

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 2.20 MB

english, 2020

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